Additional file 3 of Assignment of structural domains in proteins using diffusion kernels on graphs

Additional file 3. Results and performance evaluation of KluDo over the multi-domain structures of ASTRAL40, assuming all structures as multi-domain. This file contains KluDo results as well as accuracy and mean and standard deviation of the ARI score over the multi-domain structures of ASTRAL40, assuming all structures as multi-domain. The accuracy is calculated based on the OL and ARI scores considering the thresholds from 5% to 100% with the interval 5%. From the ASTRAL40 dataset, 2208 out of 11958 protein chains that were recognized as multi-domain by both SCOP and CATH were considered. All these structures were assumed as multi-domain by KluDo (the single/multi-domain classifier was not employed). The results and performance for all kernel function-clustering method combinations with the default parameter values are provided. KK and SP stand for kernel k-means and spectral clustering, respectively.