Hyla arborea transcriptome
收藏DataONE2013-04-22 更新2024-06-27 收录
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资源简介：
Adult male H. arborea transcriptome, from brain, eye, heart, liver, muscle, and testis. 2.2 Gbp raw reads assembled with Trinity. When multiple splice variants assembled, only longest retained. Scaffolded with SSPACE.
Scaffolds corresponding to genes or gene fragments used in this study:
CHD1: scaffold12406
ARL8A: scaffold8654
CHERP: scaffold390
CSDE1: scaffold1308
DMRT1: scaffold6154
DOCK8: scaffold31469
FRYL: scaffold80
KIAA0232: scaffold192
LOC100494802: scaffold13879
MAP1B: scaffold574
MTUS1: scaffold1029
NDRG2: scaffold355
RAD23B: scaffold2417
WDR1: scaffold1232
成年雄性雨滨蛙（H. arborea）的转录组，取材于脑组织、眼球、心脏、肝脏、肌肉及睾丸。采用Trinity软件对2.2 Gbp的原始读段进行组装，若存在多个剪接变异体组装结果，则仅保留最长的转录本。使用SSPACE软件完成支架构建。
本研究所使用的对应于基因或基因片段的支架序列如下：
CHD1：scaffold12406
ARL8A：scaffold8654
CHERP：scaffold390
CSDE1：scaffold1308
DMRT1：scaffold6154
DOCK8：scaffold31469
FRYL：scaffold80
KIAA0232：scaffold192
LOC100494802：scaffold13879
MAP1B：scaffold574
MTUS1：scaffold1029
NDRG2：scaffold355
RAD23B：scaffold2417
WDR1：scaffold1232
创建时间：
2013-04-22
