Additional file 2 of The impacts of viral infection and subsequent antimicrobials on the microbiome-resistome of growing pigs

Additional file 2: Dataset S1. Metadata for all samples presented in this study. Dataset S2. Results from microbiome (phylum and genus level) differential abundance testing of each treatment group, by sampling time point. Dataset S3. Results from microbiome (phylum and genus level) differential abundance testing between treatment group, for each sampling time point. Dataset S4. Results from microbiome (phylum and genus level) differential abundance testing by sampling time point (ie. all treatment group samples together). Dataset S5. Results from resistome (ARG level ie. AMR gene group) differential abundance testing of each treatment group, by sampling time point. Dataset S6. Results from resistome (ARG level ie. AMR gene group) differential abundance between treatment group, for each sampling time point. Dataset S7. Results from resistome (ARG level ie. AMR gene group) differential abundance by sampling time point (ie. all treatment group samples together).