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Environmentally isolated Palmaria palmata hologenome raw sequence reads

B2FIND2026-03-19 收录

天然产物生物合成基因挖掘

红藻全基因组测序

数据链接：

https://b2find.eudat.eu/dataset/21468760-75f8-5183-b9ed-7c7d86a5393b 数据链接链接失效反馈

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Palmaria palmata is a known producer of the bioactive natural product kainic acid. We performed Oxford Nanopore sequencing to identify the genes responsible for biosynthesis and...

应用场景：

土壤微生物次级代谢

天然产物生物合成基因挖掘

The number of bacterial species estimated to exist in the Earth's biosphere has increased dramatically in recent years. This newly recognized species diversity has raised the possibility that bacteri

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The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

次级代谢基因多样性分析

天然产物生物合成基因挖掘

New bioinformatic tools are needed to analyze the growing volume of DNA sequence data. This is especially true in the case of secondary metabolite biosynthesis, where the highly repetitive nature of t

NIAID Data Ecosystem30

Streptomyces rectiverticillatus Genome sequencing. Streptomyces rectiverticillatus

链霉菌基因组

天然产物生物合成基因挖掘

Streptomyces isolate from desert soil sample. 16S rRNA sequence most closely aligns to S. rectiverticillatus NBRC 13079 (99%) and S. aureoversilis NBRC 13021 (99%). PacBio whole genome sequencing for

NIAID Data Ecosystem20

Environmentally isolated Digenea simplex hologenome sequencing and assembly. Digenea simplex

天然产物生物合成基因挖掘

物种基因组学

Digenea simplex is a well known producer of the natural product kainic acid. We completed Oxford Nanopore whole genome sequencing of an environmentally collected isolate to identify the genes responsi

NIAID Data Ecosystem40

Additional file 5 of Pangenome mining of the Streptomyces genus redefines species’ biosynthetic potential

微生物系统发育学

天然产物生物合成基因挖掘

Additional file 5. Phylogenetic trees using different methods. Three different phylogenetic tree files were calculated using autoMLST, getphylo and GTDB-Tk methods. The iTOL project with all the phylo

Figshare2025-01-15 更新20

Environmentally isolated Palmaria palmata hologenome raw sequence reads

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