NonmetricANOVA

Nonmetric Analysis of Variance manuscript_code.Rmd file provides codes that are needed to reproduce analyses and figures for the manuscript. nm_ANOVA.R file contains the nmANOVA algorithm as a function of dissimilarity measures and partitions selected for testing. SD1.xlsx is a file with supplementary information. It contains BLAST bit scores for 78 angiosperms (Section: Phylogenetic bipartition assessment with BLAST bit scores). SD2.xslx is a file with supplementary information. It contains combination sensitivity scores from O'Neil study (O'Neil et.al. 2016) obtained from DrugComb portal (Section: Drug combination sensitivity scoring for cell lines). SD3.RData is a file with supplementary information. It provides Kullback-Leibler scores for the bladder cancer dataset used in the study (Section: Kullback-Leibler divergence for gene expression data).非度量方差分析（Nonmetric Analysis of Variance） manuscript_code.Rmd 文件包含复现该手稿中分析过程与可视化图表所需的代码。 nm_ANOVA.R 文件包含 nmANOVA 算法，该算法以差异度量（dissimilarity measures）及经筛选用于测试的分组（partitions）作为函数参数实现。 SD1.xlsx 为补充信息文件，内含78种被子植物的BLAST比特分值（BLAST bit scores），对应章节为「基于BLAST比特分值的系统发育二分划分评估」。 SD2.xslx 为补充信息文件，内含从 DrugComb 门户（DrugComb portal）获取的 O'Neil 等人2016年研究中的药物组合敏感性评分，对应章节为「细胞系药物组合敏感性评分」。 SD3.RData 为补充信息文件，提供了本研究使用的膀胱癌数据集的库尔贝克-莱布勒散度（Kullback-Leibler divergence）分值，对应章节为「基因表达数据的库尔贝克-莱布勒散度分析」。