Supplementary Tables 7.1 - 7.9

Supplementary Table 7.1. Carbapenemase-producing tests used to detect colonization at patient admission. Supplementary Table 7.2. BLAST similarity search results for the repA gene in p146KP-NDM3. Supplementary Table 7.3. Summary of BLAST similarity search results for p146KP-NDM3 backbone (region 1 - 12175 + region 73023 - 97321). Only sequences with a query coverage above 90% are reported. Supplementary Table 7.4. BLAST similarity search results for p146KP-NDM3 Class 1 integron carrying blaNDM-23 (region 34416-44583). Only sequences with a query coverage above 85% are reported. Supplementary Table 7.5. Lists of isolates and database genomes included in this study. Accession number, bioproject, biosample, strain name, centre name, country, isolation date and genetic relevant information as virulence and resistance genes are reported. Supplementary Table 7.6. Main features of phages detected by PHASTER in isolate 146KP-HG. Intact phages were removed from the complete genome alignment for phylogenetic analyses. Supplementary Table 7.7. Mapping statistics of reads aligned to 146KP-HG isolate chromosome. Reference length, number of aligned positions to the reference, coverage, number of unaligned positions, heterozygous, and low-depth positions. Supplementary Table 7.8. Pairwise distance matrix based on the number of differences obtained from the whole genome alignment (5.3 Mb). Supplementary Table 7.9. Coverage of plasmids found in 146KP-HG isolate for each genome and number of CDS found in the remaining accessory genome.