Cortical diurnal rhythms remain intact with microglial depletion

This dataset allows for the exploration of cortical genes at across different timepoints (ZT2, ZT6, ZT10, ZT14, ZT 18, ZT22) in control C57BL/6J mice compared to microglia-depleted C57BL/6J mice (10 day PLX5622 treatment). Overall design: C57BL/6J mice were fed either control diet or diet containing the CSF1R inhibitor PLX5622 (1200 ppm) for 10 days. Following treatment, brains were harvested at Zeitgeber times (ZT): ZT2, ZT6, ZT10, ZT14, ZT18, and ZT22. Brains were microdissected for bulk-tissue RNA sequencing (RNAseq) of the cortex. N=4 per group except for control ZT14 which has N=3.