Native structure is here taken as the Rfam consensus structure from the seed alignments of these elements of HCV and HIV. Two measures are given. The average distance represents the average base pair
A comparison of three secondary structure prediction algorithms, using shape data from Deigan et al. [15] for the three RNA molecules, yeast aspartyl tRNA (asp-tRNA), hepatitis C virus internal riboso
Supplemental Data S1. ScanFold output for all genomes. Raw output alongside files used to visualize data. Please see README for detailed descriptions of each file.
Files used to create SVG illustrations shown in Supplementary figure S2 of the paper:1. LinearTurboFold alignments/structures2. GFF annotation files used to color structure (results of annotate_intron