Slidescans: p161

This repository constains all the slidescans associated with slide block p161 for the project: <strong>A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids</strong> Vito RT Zanotelli<br> Matthias Leutenegger<br> Xiao‐Kang Lun<br> Fanny Georgi<br> Natalie de Souza<br> Bernd Bodenmiller <em>Mol Syst Biol. (2020) 16: e9798</em><br> https://doi.org/10.15252/msb.20209798 <em>Please cite this article if you re-use any of the data or code.</em> Each acquisition follows the naming scheme: "{operator}_{date}_{slideblock}_{slidenr}{suffix}" e.g. v.zanotelli_20190509_p161_025.czi Each acquisition has 3 files: - suffix='.czi': main slidescan - suffix='_pt1.czi': slide label scan - suffix='_pt2.csi': coarse slide overview scan Each 'main slidescan' is usually composed of multiple 'Scenes', corresponding to regions scanned with high resolution. The convention is that each scene corresponds to unique cut that is independently stained and processed. Note that scene numbering does not necessarily follows a logical order. The slidescans were acquired using an AxioScan A1 <br>