Additional results and imputation commands.

The supplementary file includes the computational details of ClusterPSO and supplementary Figures and Tables. Length distribution of the results of CpGIS, CpGCluster, CPSORL, and ClusterPSO in the human genome (Figure A). Distribution of the results of CpG islands in the human genome (Figure B). XY charts comparing the true positive and false positive rates amongst the six methods for six contig sequences (Figure C). Box plot comparing the stability of five methods in six contig sequences (Figure D). Box plot of the O/E ratio for each interval length in the human genome (Figure E). Number of CpG islands located in gene regions identified with CPSORL and ClusterPSO (Table A). Performance measurement of ClusterPSO and CPSORL for all chromosomes in the human genome (Table B). Number of detection CpG islands overlapping on true CpG islands for CpGcluster, CPSORL and ClusterPSO for all chromosomes in the human genome (Table C). (DOC)