Data and scripts in Huang et al. "Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota"

This compressed file includes six folders:<br>1_single_protein_trees_of_orthologs:<br>Alignments and treefiles used in the "Selection of orthologs for phylogenetic analysis of Woesearchaeota".<br>2_phylogenetic_trees_Woese&amp;Pace:<br>Alignments and treefiles of 152 MAGs for phylogenetic analysis based on 15 ribosomal proteins and the top-50% ranked orthologs<br>3_16S_rRNA_gene:<br>Alignments and treefiles used in the 16S rRNA gene phylogenetic analysis<br>4_individual_protein_trees:<br>Alignment and treefiles used in the phylogenetic analyses in fig.4, suppl. fig6-7, suppl. fig9-22 and suppl. fig24-41<br>5_protein_families_52_MAGs:<br>The file includes alignment and treefile of phylogenetic analysis of 52 MAGs, ALE reconciliation results and protein families files<br>6_scripts<br>Python scripts used in phylogenetic analysis and R scripts used in ecological analysis<br>7_protein_files<br>Proteins faa files and annotation files