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Performance of 16S rRNA primer pairs in the study of rhizosphere and endosphere bacterial microbiomes in metabarcoding studies
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创建时间：
2016-12-07
相关数据集
Summary of the amplification range and discriminatory power predicted for the mammalian 16S rRNA primers.
The table indicates, for each mammalian order, the number of species deposited in NCBI for the 16S rRNA genes, the number of species predicted to be amplified by the universal primers as well as the p
NIAID Data Ecosystem30
Supplementary material 6 from: Herrera-Mesías F, Ep Jarboui IK, Weigand AM (2022) A metabarcoding framework for wild bee assessment in Luxembourg. Journal of Hymenoptera Research 94: 215-246. https://doi.org/10.3897/jhr.94.84617
Mock community metabarcoding results
NIAID Data Ecosystem30
placeholder. Metagenome. Gallus gallus (Chicken Broilers)
The aim of this study was to determine the effect of different 16S rRNA primers on taxonomic composition, diversity, and predicted function of chicken cecal microbial community. Cecal digesta collecte
NIAID Data Ecosystem20
Additional file 20 of In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea
Additional file 20: Oral-bacteria species non covered by KP_F078-OP_R010, KP_F047-KP_R035, and OP_F009-OP_R029; and oral-archaea species non covered by KP_F078-OP_R010.
Figshare2024-08-13 更新30
Additional file 1 of PrimerEvalPy: a tool for in-silico evaluation of primers for targeting the microbiome
Additional file 1: Oral-bacteria database of the 16S rRNA gene sequences which was used for the coverage analysis.
NIAID Data Ecosystem20
