Additional file 7 of Assignment of structural domains in proteins using diffusion kernels on graphs

Additional file 7. KluDo's performance based on the number of domains over ASTRAL40. This file consists of the accuracies over the results in Additional file 4 separated by the number of domains. Based on each of the SCOP and CATH databases, four subsets were extracted from ASTRAL40: 1-domain, 2-domain, 3-domain, and 4-domain structures. For each subset, the percent of the correct assignments (the cases of compliance with SCOP or CATH based on the OL score using an 85% threshold), overcuts (the cases of assigning a higher number of domains than both SCOP and CATH), undercuts (the cases of fewer domains than both SCOP and CATH), boundary inconsistencies (the cases of incorrect assignment where the number of domains complies with SCOP or CATH) and other cases were measured. CA, OC, UC, and BI represent correct assignments, overcuts, undercuts and boundary inconsistencies, respectively. Also, KK and SP stand for kernel k-means and spectral clustering, respectively.