Additional file 1: Table S1. of The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

Sequencing and analysis statistics of the cinereous vultureâ s WGS relative to the bald eagle genome. Table S2 17-mer statistics. Table S3 Summary of SNVs and small indel in the cinereous vulture. Table S4 PSGs list of the Accipitrimorphae using a branch-site model. Table S5 PSGs list of the Accipitrimorphae using a branch model. Table S6 Functional annotation chart of PSGs of the Accipitrimorphae. Table S7 PSGs list of the cinereous vulture using a branch-site model. Table S8 PSGs list of the cinereous vulture using a branch model. Table S9 PSGs list of the turkey vulture using a branch-site model. Table S10 PSGs list of the turkey vulture using a branch model. Table S11 Functional annotation chart of PSGs of the cinereous vulture. Table S12 Functional annotation chart of PSGs of the turkey vulture. Table S13 Unique amino acid changes of the turkey vulture. Table S14 Unique amino acid changes of the cinereous vulture Table S15 Unique amino acid changes of the Accipitridae. Table S16 Unique amino acid changes on sites between Accipitridae and Cathartidae of the digestive system-related proteins. Table S17 Unique amino acid changes on sites between Accipitridae and Cathartidae of the gastric acid secretion-related proteins. Table S18 Statistics regarding whole-transcriptome sequences and unigene construction. Table S19 GO analysis for the blood transcriptome of the cinereous vulture. Table S20 KEGG pathway analysis for the blood transcriptome of the cinereous vulture. Table S21 Gene expression in the cinereous vulture compared to the other avian species. Table S22 Immune related genes expression in the cinereous vulture compared to the other avian species. (XLSX 635 kb)

以白头海雕基因组为参考的秃鹫（cinereous vulture）全基因组测序（Whole Genome Sequencing, WGS）测序与分析统计。表S2 17聚体（17-mer）统计。表S3 秃鹫单核苷酸变异（Single Nucleotide Variant, SNV）与小插入缺失（insertion-deletion, indel）汇总统计。表S4 基于分支位点模型（branch-site model）的鹰形类（Accipitrimorphae）正选择基因（Positive Selected Genes, PSGs）列表。表S5 基于分支模型（branch model）的鹰形类正选择基因列表。表S6 鹰形类正选择基因的功能注释统计图。表S7 基于分支位点模型的秃鹫正选择基因列表。表S8 基于分支模型的秃鹫正选择基因列表。表S9 基于分支位点模型的红头美洲鹫（turkey vulture）正选择基因列表。表S10 基于分支模型的红头美洲鹫正选择基因列表。表S11 秃鹫正选择基因的功能注释统计图。表S12 红头美洲鹫正选择基因的功能注释统计图。表S13 红头美洲鹫特异性氨基酸变异位点。表S14 秃鹫特异性氨基酸变异位点。表S15 鹰科（Accipitridae）特异性氨基酸变异位点。表S16 鹰科与美洲鹫科（Cathartidae）消化系统相关蛋白的位点特异性氨基酸变异。表S17 鹰科与美洲鹫科胃酸分泌相关蛋白的位点特异性氨基酸变异。表S18 全转录组测序及单基因簇（unigene）构建统计。表S19 秃鹫血液转录组基因本体（Gene Ontology, GO）富集分析。表S20 秃鹫血液转录组京都基因与基因组百科全书（Kyoto Encyclopedia of Genes and Genomes, KEGG）通路富集分析。表S21 秃鹫与其他鸟类的基因表达量对比。表S22 秃鹫与其他鸟类的免疫相关基因表达量对比。（XLSX格式，文件大小635 KB）