16S rRNA sequencing gene datasets for CRC data

Used datasets: Dataset 16S rRNA Region Control (n) Adenoma (n) CRC (n) Available metadata Baxter V4 171 198 120 Gender, age, weight, height, BMI, country, race Zackular V4 30 30 30 Gender, age, weight, height, BMI, country, race, FOBT, medication Zeller V4 50 38 41 Gender, age, BMI, country, FOBT TOTAL V4 251 266 191 All of the above Data processing & sharing All datasets were processed using qiime2 pipeline with DADA2 for Sequence quality control and feature table construction and SILVA database for taxonomic assignment, and then a phyloseq object was constructed. Abundance table at genus level is in file genus.csv (Sample counts with NO filtering). Clean metadata is in metadata.csv file (Countries: CA - Canada. USA - United States of America. FRA - France.) Phyloseq object is in file physeq.RDS (Saved as an RDS object in R) More information is here.