ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach

Pretrain data and results for: Promoter regions for all genes in 127 different cell lines in ROADMAP CRM (cis-regulatory module) regions longer than 2k bps in 127 different cell lines in ROADMAP Whole genome regions without continuous low signal state ("O") in 4-mer Fine-tuning data and result for: Promoter regions of high-expressed genes (from RPKM>10 to RPKM>50) compared to not expressed genes (RPKM=0) or low-expressed genes (RPKM>0) with the directory names: not_n_rpkm0 : RPKM=0 vs. RPKM>0 not_n_rpkm10 : RPKM=0 vs. RPKM>10 not_n_rpkm20 : RPKM=0 vs. RPKM>20 not_n_rpkm30 : RPKM=0 vs. RPKM>30 not_n_rpkm50 : RPKM=0 vs. RPKM>50 rpkm0_n_rpkm10 : RPKM>0 vs. RPKM>10 rpkm0_n_rpkm20 : RPKM>0 vs. RPKM>20 rpkm0_n_rpkm30 : RPKM>0 vs. RPKM>30 rpkm0_n_rpkm50 : RPKM>0 vs. RPKM>50 rpkm10_n_rpkm20 : RPKM>10 vs. RPKM>20 rpkm10_n_rpkm30 : RPKM>10 vs. RPKM>30 rpkm10_n_rpkm50 : RPKM>10 vs. RPKM>50 rpkm20_n_rpkm30 : RPKM>20 vs. RPKM>30 rpkm20_n_rpkm50 : RPKM>20 vs. RPKM>50 rpkm30_n_rpkm50 : RPKM>30 vs. RPKM>50 CRM regions longer than 2k bps compared to non-CRM regions