Mass spectrometry data, Jazaeri et al.

Related to TurboID based proximity-labelling screen. Output tables from a FragPipe proteomics workflow, reporting quantified protein groups, differential comparisons between conditions, together with experimental design metadata. of mass spectrometric analysis from proximity-labelling. Summary of 3 independent experiments. Sample numbers refer to the followingAJ_Nr01: pc-DNA3AJ_Nr02: TRIM28-TurboIDAJ_Nr03: TurboID-TRIM28AJ_Nr04: TRIM28 (ΔTSS)-TurboIDAJ_Nr05: TurboID-TRIM28(ΔTSS)AJ_Nr06:TurboID (Only) sheets: 1st sheet: all protein group identifications filtered to proteins identified with at least two different peptides.2nd sheet: statistical test results after imputation of missing values (see last sheet “Note” for more explanations)3rd sheet: list of all identified peptides (including those single hit wonders removed for the protein group summaries). The peptides with ubiquitinylation or biotinylation are sorted to the top of the table.4th sheet: experimental design used to do the statistical DE analysis5th sheet: a number summary and figures illustrating the data6th sheet: notes