Data and code underlying the publication: Emergence of novel SARS-CoV-2 variants in the Netherlands

SARS-CoV-2 genome dataset to accompany our publication: Emergence of novel SARS-CoV-2 variants in the Netherlands from Scientific Reports [1].<br>Complete, high quality (number of undetermined bases less than 1% of the whole sequence) genome sequences of SARS-COV-2 that were isolated from human hosts only were obtained from GISAID, NCBI and China’s National Genomics Data Center (NGDC) on June 13th 2020. The dataset contained 29,503 sequences with unique identifiers in total, including the Wuhan-Hu-1 reference sequence (accession ID NC_045512.2). The “Collection date” field was also extracted for all sequences, and it is referred to as “date” throughout our work.<br>The acknowledgement table for GISAID sequences can be found in Supplementary file 2 and the full list of sequence identifiers for NCBI and NGDC records are provided in Supplementary file 3 in the corresponding publication [1].<br>[1]: Urhan, A., Abeel, T. Emergence of novel SARS-CoV-2 variants in the Netherlands. <em>Sci Rep</em> <strong>11</strong>, 6625 (2021). https://doi.org/10.1038/s41598-021-85363-7

本数据集配套发表于《科学报告（Scientific Reports）》的论文《荷兰地区新型SARS冠状病毒2型（SARS-CoV-2）变异株的出现》[1]。
仅收录从人类宿主分离得到的完整、高质量（未确定碱基占全序列总长度比例低于1%）的SARS-CoV-2基因组序列，于2020年6月13日从全球流感共享数据库（GISAID）、美国国家生物技术信息中心（NCBI）以及中国国家基因组数据中心（NGDC）获取。本数据集总计包含29503条带有唯一标识符的序列，其中包含Wuhan-Hu-1参考序列（登录号NC_045512.2）。我们为所有序列提取了“采集日期（Collection date）”字段，在本研究中该字段简称为“日期（date）”。
GISAID序列的致谢列表详见补充文件2，NCBI与NGDC序列的完整标识符列表见对应发表论文[1]的补充文件3。
[1]: Urhan, A., Abeel, T. 荷兰地区新型SARS-CoV-2变异株的出现. 《科学报告》, 11, 6625 (2021). https://doi.org/10.1038/s41598-021-85363-7