Oncorhynchus tshawytscha bowtie1 index

Bowtie1 index generated from individual chromosome files for Chinook salmon (Oncorhynchus tshawytscha) based on Ensembl release 105 (Otsh_v1.0 - GCA_002872995.1). Index was initially used to align small RNA reads for identification of microRNA altered due to increased ploidy and infection. <br> Genome information: Otsh_v1.0.dna.primary_assembly.1.fa Otsh_v1.0.dna.primary_assembly.2.fa Otsh_v1.0.dna.primary_assembly.3.fa Otsh_v1.0.dna.primary_assembly.4.fa Otsh_v1.0.dna.primary_assembly.5.fa Otsh_v1.0.dna.primary_assembly.6.fa Otsh_v1.0.dna.primary_assembly.7.fa Otsh_v1.0.dna.primary_assembly.8.fa Otsh_v1.0.dna.primary_assembly.9.fa Otsh_v1.0.dna.primary_assembly.10.fa Otsh_v1.0.dna.primary_assembly.11.fa Otsh_v1.0.dna.primary_assembly.12.fa Otsh_v1.0.dna.primary_assembly.13.fa Otsh_v1.0.dna.primary_assembly.14.fa Otsh_v1.0.dna.primary_assembly.15.fa Otsh_v1.0.dna.primary_assembly.16.fa Otsh_v1.0.dna.primary_assembly.17.fa Otsh_v1.0.dna.primary_assembly.18.fa Otsh_v1.0.dna.primary_assembly.19.fa Otsh_v1.0.dna.primary_assembly.20.fa Otsh_v1.0.dna.primary_assembly.21.fa Otsh_v1.0.dna.primary_assembly.22.fa Otsh_v1.0.dna.primary_assembly.23.fa Otsh_v1.0.dna.primary_assembly.24.fa Otsh_v1.0.dna.primary_assembly.25.fa Otsh_v1.0.dna.primary_assembly.26.fa Otsh_v1.0.dna.primary_assembly.27.fa Otsh_v1.0.dna.primary_assembly.28.fa Otsh_v1.0.dna.primary_assembly.29.fa Otsh_v1.0.dna.primary_assembly.30.fa Otsh_v1.0.dna.primary_assembly.31.fa Otsh_v1.0.dna.primary_assembly.32.fa Otsh_v1.0.dna.primary_assembly.33.fa Otsh_v1.0.dna.primary_assembly.34.fa <br> Bowtie1 information: bowtie version 1.1.2<br> 64-bit