artificial metagenomes and MAG

The data here includes artificially created metagenomes plus an artificially created metagenome assembled genome (MAG). The artificial metagenome represents artificially created reads (illumina paired end (150bp) plus pacbio (8kb)) for five marine bacteria (Candidatus Pelagibacter ubique HTCC1062 (GCA_000012345.1), Maribacter sp. HTCC2170 (GCA_000153165.2), Polaribacter sp. MED152 (GCA_000152945.2), Hyphomonas neptunium ATCC 15444 (GCA_000013025.1) and Synechococcus sp. CC9311 (GCA_000014585.1). The artificial reads were created using randomreads.sh (part of bbtools). An artificial MAG was created for Candidatus Pelagibacter ubique HTCC1062, comprising nine 100kb fragments with 50kb gaps in between (except for the gap between the last and the first contig, which is only ~8kb). The files here can be used to test the script mag_refinement.sh from https://github.com/bresyd/mag_refinement/tree/main metagenome_forward2.fq and metagenome_reverse2.fq represent artificial 150bp, paired-end Illumina reads. metagenome_pacbio2.fa represent artificial 8kb pacbio reads. GCF_000012345_pieces.fasta represents the artificially created MAG for Candidatus Pelagibacter ubique HTCC1062.