Supplementary Datasets for dadasnake workflow

This dataset contains configuration and results files for the proof-of-principle of the dadasnake pipeline. Includes dadasnake output and tables with the composition of ground-truth data or mock-communities.

dadasnake is a user-friendly, one-command Snakemake pipeline that wraps the pre-processing of sequencing reads and the delineation of exact sequence variants by using the favorably benchmarked and widely-used DADA2 algorithm with a taxonomic classification and the post-processing of the resultant tables, including hand-off in standard formats. The suitability of the provided default configurations is demonstrated using mock-community data from bacteria and archaea, as well as fungi. By use of Snakemake, dadasnake makes efficient use of high-performance computing infrastructures. Easy user configuration guarantees flexibility of all steps, including the processing of data from multiple sequencing platforms. dadasnake facilitates easy installation via conda environments. dadasnake is available at https://github.com/a-h-b/dadasnake .