Colorectal cancer spatial transcriptomics and single-cell RNA-sequencing dataset

Metadata and counts matrix (barcode and genes files also provided) for the colorectal cancer (CRC) spatial transcriptomics and scRNA-seq dataset utilized in the Crescrendo manuscript published by Millard et al. (2025). Batch column indicates whether cell is from scRNA-seq data or which spatial transcriptomics slice. The sample_id column indicates the sample the cell is from. The center_x and center_y columns indicate the center of the cell in space (scRNA-seq cells have 0 in these columns). The orig_publication_type indicates fine-grained cell type labels from the original publication of the CRC scRNA-seq dataset, while the cresc_publication_type column indicates the more coarse-grained cell type labels from the Crescendo publication.