Additional file 4: Table S4. of The link between adjacent codon pairs and mRNA stability

Test for association of the out-of-frame inhibitory codon pairs with mRNA decay rate, protein abundance per mRNA, and ribosome occupancy. (A) Spearmanâ s correlation and partial correlation coefficients to assess associations between the fraction of the inhibitory codon pairs in the +1 frame and the gene expression variables. P values obtained according to Kim [16] and those based on permutation tests are shown. (B) Same as (A) but for Kendallâ s correlation coefficients. (C) Same as (A) but for the presence/absence of the inhibitory codon pairs. (D) Same as (B) but for the presence/absence of the inhibitory codon pairs. (E) Same as (A) but for the +2 frame. (F) Same as (B) but for the +2 frame. (G) Same as (C) but for the +2 frame. (H) Same as (D) but for the +2 frame. (XLSX 57Â kb)