ASV tables generated during sequence processing

These are ASV tables generated during processing of raw .fastq files. The first steps, error correction, chimaera removal, and taxonomic assignment, are carried out wtih DADA2, and result in the file ps_object_after_dada2.rds. Next steps include removing non-target sequences and samples with abnormally low numbers of sequences, and applying a prevalence filter, resulting in the final ASV table, phyloseq_after_pruning_filtering.rds. Both these files are phyloseq objects saved as R data files (.rds). They can be loaded into R using the readRDS function. <br> To run the R scripts from the github repository associated with the Legionella microbiome paper, these .rds files should be saved in the folder /data/process/.