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Data for ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

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DataCite Commons2025-06-01 更新2024-07-29 收录
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https://figshare.com/articles/dataset/Data_for_ClonalFrameML_Efficient_Inference_of_Recombination_in_Whole_Bacterial_Genomes/19626912/1
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Contains the following data used as an example (Figure 1) in the paper: <strong>Saureus.fasta </strong>multiple sequence alignment of S. aureus genomes, variable sites only <strong>Saureus.phyML.newick </strong>phylogeny relating the clonal frame of the S. aureus genomes <strong>Saureus.non-core-sites.txt</strong> list of variably present sites to exclude from analysis <strong>core-sites.txt</strong> list of core sites present in all genomes <strong>cfml_results_2.R</strong> R code for generating figures
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figshare
创建时间:
2022-04-21
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