Supplementary data 1 - RbcL phylogenetic tree data

Phylogenetic tree using RbcL gene from eukaryotic phytoplankton with sequenced genomes. Programs used: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Monaco; color: #f5f5f5; background-color: #000000} span.s1 {font-variant-ligatures: no-common-ligatures} Usage for FastTree version 2.1.8 Double precision (No SSE3), OpenMP (2 threads): Kalign version 2.04, Copyright (C) 2004, 2005, 2006 Timo Lassmann MAFFT v6.861b (2011/09/24) MUSCLE v3.8.31 by Robert C. Edgar PhyML version 20160115. pmodeltest.py v1.4 prank v.100802. Minimal usage: 'prank sequence_file' PROBCONS version 1.12 - align multiple protein sequences and print to standard output RAxML version 8.1.20 released by Alexandros Stamatakis on April 18 2015. pthreads: OK - This is RAxML version 8.1.20 released by Alexandros Stamatakis on April 18 2015. readAl v1.4.rev6 build[2012-02-02] statAl v1.4.rev6 build[2012-02-02] PROGRAM: T-COFFEE Version_11.00.8cbe486 (2014-08-12 22:05:29 - Revision 8cbe486 - Build 477) trimAl v1.4.rev6 build[2012-02-02]本数据集为基于已完成全基因组测序的真核浮游植物的RbcL基因（Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit gene）构建的系统发育树。所用分析程序如下：FastTree 2.1.8 双精度版（无SSE3指令集优化），支持OpenMP并行（2线程）；Kalign v2.04，版权所有©2004、2005、2006 Timo Lassmann；MAFFT v6.861b（发布于2011/09/24）；MUSCLE v3.8.31，作者为Robert C. Edgar；PhyML 20160115版；pmodeltest.py v1.4；prank v.100802，最小使用命令为`prank sequence_file`；PROBCONS v1.12，用于多蛋白质序列比对并将结果输出至标准输出流；RAxML v8.1.20，由Alexandros Stamatakis于2015年4月18日发布，支持pthreads并行；本版本为RAxML v8.1.20，由Alexandros Stamatakis于2015年4月18日发布；readAl v1.4.rev6，构建于2012-02-02；statAl v1.4.rev6，构建于2012-02-02；T-COFFEE v11.00.8cbe486（发布于2014-08-12 22:05:29，修订版8cbe486，构建编号477）；trimAl v1.4.rev6，构建于2012-02-02。