CAGE peaks annotation (mm10 v3)

Annotation files = Transcript association * (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_trans.txt * (Mouse phase1+2 set) mm10_liftover+new_CAGE_peaks_phase1and2_trans.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) Associated transcript ID 3) Distance between CAGE peak and associated transcript 4) Number of transcripts within 500bp (polII transcripts) or 50bp (non-polII transcripts) 5) All transcripts within the above cutoffs (500bp or 50bp) (Transcript ID:distance) = Gene/protein association * (Human phase1+2 set) hg38_liftover+new_CAGE_peaks_phase1and2_annot.txt * (Mouse phase1+2 set) mm10_liftover+new_CAGE_peaks_phase1and2_annot.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) Associated transcript ID 3) Distance between CAGE peak and associated transcript 4) EntrezGene GeneID 5) HGNC/MGI ID 6) UniProt ID 7) Associated gene name 8) Associated gene symbol 9) Associated gene synonym 10) Source of associated gene = CAGE peak name * (Human phase1+2 set) human_phase1and2_CAGE_Peak_name.txt * (Mouse phase1+2 set) mouse_phase1and2_CAGE_Peak_name.txt (Format) 1) CAGE peak ID "(Old FANTOM5 CAGE Peak ID);(new TSS ID)" 2) New CAGE peak name 3) Old (Obsoleted) CAGE peak name = Annotation sources Jun. 16th, 2015 snapshots of the following databases * EntrezGene * Gencode (Human v22, Mouse vM4) * HGNC * MGI * UCSC Genome Browser (hg38/mm10) * UniProt