Gene coexpression data in ALCOdb

Coexpression data provided in ALCOdb. Details of the data can be found on the download page in ALCOdb. http://alcodb.jp/coexpression/download Coexpression data Cre.v15-08.G15519-S172.quantile.mrgeo.d.zip Cre.v15-02.G15540-S180.qnorm.mrgeo.d.zip Cre.v13-10.G18773-S137.qnorm.mrgeo.d.zip Cme1.v14-06.G4586-S75.d.zip Cme2.v14-06.G6506-S48.d.zip Gene expression table to calculate the coexpression data Cre-R1-15-08_GeneExpressionTable.tsv.gz Cme1_GeneExpressionTable.tsv.zip Cme2_GeneExpressionTable.tsv.zip Codon usage similarity for evaluation Cre_v55.CodonUsage.G17741.zip Data Format Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d). File Name: Cre01g001400 Line1: Cre03g197300 1.00 0.8352 Line2: Cre13g605200 6.63 0.6938 Line3: Cre09g411751 7.35 0.7082 Line4: Cre15g638551 9.38 0.7128 Line5: Cre01g037600 10.25 0.6761 Columns are tab-deliminated. Lines are sorted by column2. Column1: ID of coexpressed gene. Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression] Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]