Text S1 - Inheritance Beyond Plain Heritability: Variance-Controlling Genes in Arabidopsis thaliana

Details of the genetic dissection of the analyzed traits. Table A1: Quantitative phenotypes analyzed. Figure A1: Dissection of the phenotypic variance with respect to the level of variance heterogeneity. Figure A2: Dissection of the phenotypic variance with respect to the low-variance allele frequency (LAF). Figure A3: Power of the Brown-Forsythe test with respect to the level of variance heterogeneity. Figure A4: A simulation study comparing the genome-wide p-values of vGWAS before and after genomic control (GC). Figure B1–B83: Summary of vGWAS results for the 83 analyzed quantitative traits. Table 1–83: GWAS and vGWAS scores and ranks of the 83 analyzed quantitative traits. Tutorial of the R package vGWAS together with its documentation. (PDF)