Files for Main Figure 3
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<b>Simulated reads Section</b>Simulated_reads_quantification_mat : Quantified TEs in TPM counts in simulated short-read measured by 7 approaches. File used for main figure 3.<b>Cell line Section</b>6 Cell lines TE matrices quantified by long-read, Telescope (short-read), LocusMasterTE (short-read)SG-Nex_A549: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using A549 cell line in SG-NEx studySG-Nex_HepG2: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HepG2 cell line in SG-NEx studySG-Nex_HCT116: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HCT116 cell line in SG-NEx studySG-Nex_K562: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using K562 cell line in SG-NEx studySG-Nex_MCF-7: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using MCF-7 cell line in SG-NEx studyInhouse_HCT116: TE counts by long-read, Telescope (short-read), LocusMasterTE (short-read) using HCT116 sample generated by our lab
提供机构：
LEE, Sojung
创建时间：
2024-01-22
