Additional file 1: Table S1. of Whole-genome transcription and DNA methylation analysis of peripheral blood mononuclear cells identified aberrant gene regulation pathways in systemic lupus erythematosus

Upregulated genes in PBMC of SLE patients compared with normal controls by microarray analysis. S1-1 showed the complete list of 552 upregulated genes in SLE. Three group comparisons in gene expression, SLE (LN− and LN+) vs. NC (S1-2), SLE LN− vs. NC (S1-3), and SLE LN+ vs. NC (S1-4), were performed to identify upregulated genes by fold change (FC) > 1.2 and p < 0.05 within each group. The 552 common upregulated genes in SLE were then selected from each of the three group comparisons. S1-5 showed gene expression of 552 common upregulated genes represented by normalized intensity in SLE. (XLSX 694 kb)