Additional file 1: of Comparative analysis reveals unexpected genome features of newly isolated Thraustochytrids strains: on ecological function and PUFAs biosynthesis

Table S1. Summary of genome sequencing quality and reads mapping quality. Table S2. Comparison of quality assessment and assembly statistics of two methods. Table S3. Comparison of GO classifications of annotated genes for P. multiseries, P. tricornutum and Mn4. Table S4. Genomes for the other organisms in this study. Table S5. Classification of duplicate gene origins in the thraustochytridsâ genomes. Table S6. Statistics for IPR domains enriched in thraustochytrids compared to outgroups. Table S7. Statistics for IPR domains depleted in thraustochytrids compared to outgroups. Table S8. Distribution of CAZy Families in genomes of thraustochytrids. Table S9. Distribution of CAZy Families in secretomes of thraustochytrids. Table S10. Statistics for the up-regulated /down-regulated genes identified in two different groups. Table S11. The transcriptional expression levels of secreted CAZyme genes in Mn4. Table S12. Expression of genes related to DHA biosynthesis of the FAS pathway in Mn4. Table S13. Summary of polyketide synthase (PKS) gene clusters in thraustochytrids. (XLSX 101 kb)