Comparison of polyribosomal to total transcript profiles
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Comparison of polyribosomal to total transcript profiles
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2010-06-09
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Additional file 7: of A global characterization of the translational and transcriptional programs induced by methionine restriction through ribosome profiling and RNA-seq
Translational efficiency changes under Methionine Restriction and the codon frequency of Lysine(K), Glutamine(Q), Glutamic acid(E) and Methionine(M). This file shows the translational efficiency chang
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A transcriptome-wide divergence in protein translation scales with LIN28B expression
We report the mapping of LIN28B binding to RNA in HEK293A at various LIN28B expression levels using enhanced CLIP. We provide small RNA sequencing data regarding miRNA expression in HEK293A and those
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Transcriptome and ribosome profiling of XRN1-null HEK293T human cell line generated by CRISPR/Cas9 gene editing. Transcriptome and ribosome profiling of XRN1-null HEK293T human cell line generated by CRISPR/Cas9 gene editing
XRN1 is the major cytoplasmic exoribonuclease in eukaryotes, which degrades deadenylated and decapped mRNAs in the last step of the 5′–3′ mRNA decay pathway. Metazoan XRN1 interacts with decapping fac
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Transcriptome and translatome comparison of tissues from Arabidopsis thaliana
Translation is one of the multiple complementary steps that orchestrates gene activity. In contrast to the straightforwardness of transcriptional surveys, genome-wide profiles of the translational lan
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Transcriptome-wide profiling of translation efficiency using mRNA-seq and Ribo-seq in ER stress-induced NIH3T3 cells
We report systematical profiling of translation efficiency in stress conditions of NIH3T3 cells. In this study, we pharmacologically induced ER stress by treatment of thapsigargin (THAP). Ribo-seq and
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