Dataset for Advanced Plaque Modeling for Atherosclerosis Detection using Molecular Communication

This dataset contains the simulation results for the microfluidic molecular simulation for advanced plaque modeling using the OpenFOAM MPPIC solver. In addition to the simulation results, first simulation results for fluid-solid interaction are uploaded using the solids4foam toolbox.Publication:Alexander Wietfeld, Pit Hofmann, Jonas Fuchtmann, Pengjie Zhou, Ruifeng Zheng, Juan A. Cabrera, Frank H.P. Fitzek, and Wolfgang Kellerer, “Advanced Plaque Modeling for Atherosclerosis Detection Using Molecular Communication,” submitted to International Communications Conference 2025, SAC — Molecular, Biological, and Multi-Scale Communications, June 2025.Brief Explanation of the OpenFOAM Structure:File for visualization and post-processing of simulation results in, e.g., Paraview: foam.foamMesh created with, e.g., Salome: 4.unv (For a description of the numbering, please see below.)A system directory is designated for configuring the parameters related to the solution procedure. This directory includes at least three essential files: - controlDict: This file is responsible for establishing run control parameters, encompassing aspects such as the start and end time, time step settings, and parameters for data output. - fvSchemes: Within this file, users can dynamically select discretization schemes employed during the solution process. - fvSolution: In this file, users can define equation solvers, tolerance levels, and various algorithm controls required for the current run.Within the constant directory, comprehensive information about the case mesh is stored. This directory also hosts subdirectories like polyMesh, which house detailed descriptions of the mesh, along with files that define the physical properties relevant to the specific application. An example of such a file is transportProperties.The time directories house individual data files pertaining to specific fields. This data can encompass two distinct types: either the initial values and boundary conditions, which necessitate user specification to define the problem, or results generated by OpenFOAM and saved to files. The initial conditions are typically stored in a directory named "0".本数据集收录了采用 OpenFOAM MPPIC 解算器进行的高级斑块建模的微流控分子模拟仿真结果。除此之外，还上传了基于 solids4foam 工具箱的流体-固体相互作用的首批仿真结果。相关出版物：Alexander Wietfeld, Pit Hofmann, Jonas Fuchtmann, Pengjie Zhou, Ruifeng Zheng, Juan A. Cabrera, Frank H.P. Fitzek，以及 Wolfgang Kellerer 著，《基于分子通信的动脉粥样硬化检测的高级斑块建模》，投稿于2025年国际通信会议，SAC——分子、生物及多尺度通信，2025年6月。 OpenFOAM 结构简要说明：用于在 Paraview 等可视化及后处理仿真结果的文件为 foam.foamMesh，由 Salome 等软件创建，编号描述请参见下文。系统目录用于配置与求解过程相关的参数。该目录至少包含三个基本文件： - controlDict：负责建立运行控制参数的文件，包括起始和结束时间、时间步设置以及数据输出参数。 - fvSchemes：在此文件中，用户可以动态选择在求解过程中使用的离散化方案。 - fvSolution：在此文件中，用户可以定义方程求解器、容差水平和当前运行所需的各项算法控制。 在常量目录中，存储了有关案例网格的详细信息。此目录还包含子目录如 polyMesh，其中包含网格的详细描述，以及定义特定应用相关物理属性的文件。此类文件的示例为 transportProperties。 时间目录包含特定字段的单个数据文件。这些数据可能包含两种类型：要么是需要用户指定以定义问题的初始值和边界条件，要么是由 OpenFOAM 生成并保存到文件的结果。初始条件通常存储在名为 "0" 的目录中。