Supporting data for Robledo-Ruiz et al. (submitted)

Supporting data for manuscript: Robledo-Ruiz D. A., Austin L., Amos J. N., Castrejón-Figueroa J., Magrath M. J. L., Sunnucks P. &amp; Pavlova A. (submitted) <strong>Easy-to-use R functions to separate reduced-representation genomic datasets into sex-linked and autosomal loci, and conduct sex-assignment.</strong> <br> Data usage: The three directories have the datasets and scripts for the eastern yellow robin (EYR), yellow-tufted honeyeater (YTH) and Leadbeater's possum (LBP), respectively. <br> <strong>*_Results.Rmd</strong> R script to process outputs from 'standard regime' and 'removing sex-linked loci' regime. <br> <strong>filtering_regime_using_filter.sex.linked</strong> Folder with the script and input data required for 'Removing sex-linked loci' filtering regime. <br> <strong>filtering_regime_notusing_filter.sex.linked</strong> Folder with the script and input data required for 'Standard' filtering regime. <br> <strong>filter.sex.linked_requirements</strong> Folder with the script and input data required to replicate the analyses that investigated the minimum requirements for functions <em>filter.sex.linked</em> and <em>infer.sex</em> <br> <strong>filter.sex.linked_validation</strong> Folder with the script and input data required to replicate the analyses that validated the results of function <em>filter.sex.linked</em>