SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 5)
收藏Mendeley Data2024-01-31 更新2024-06-27 收录
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http://datadryad.org/resource/doi:10.5061/dryad.jn630/10
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资源简介:
This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
本数据集收录了通过FreeBayes工具检测得到的1300余万条单核苷酸多态性(Single Nucleotide Polymorphism,SNP)位点,相关位点来自148头取自肯尼亚、非洲及欧亚大陆的蜜蜂样本,且全部通过了质量过滤。有关单核苷酸多态性位点的处理流程、样本标签设置以及质量控制的详细信息,已在对应论文及其补充材料中予以说明。原始输入文件148_honeybees.vcf.gz已被拆分为14个编号分片(编号范围为0至13)。下载全部分片后,可通过如下UNIX命令拼接还原为原始文件:cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz。随后可通过UNIX命令解压该VCF格式文件:gunzip 148_honeybees.vcf.gz
创建时间:
2024-01-31



