Luecken Cite-seq human bone marrow 2021

Dataset published by Luecken et al. 2021 which contains data from human bone marrow measured through joint profiling of single-nucleus RNA and Antibody-Derived Tags (ADTs) using the 10X 3' Single-Cell Gene Expression kit with Feature Barcoding in combination with the BioLegend TotalSeq B Universal Human Panel v1.0.
File Descriptioncite_filtered.h5mu: Filtered barcode by feature MuData object of concatenated donor’s raw counts from filtered barcodes. This is built from the Cell Ranger output and contains the RNA and ADT ("prot" key) data.cite_raw.h5mu: Unfiltered barcode by feature MuData object of concatenated donor's raw counts extracted by Cell Ranger. It contains the RNA and ADT ("prot" key) data.cite_preprocessed.h5ad: Fully processed AnnData object used in annotation chapter.CitationLuecken, M. D. et al. A sandbox for prediction and integration of DNA, RNA, and proteins in single cells. Thirty-fifth Conference on Neural Information Processing Systems Datasets and Benchmarks Track (2021).

Original data linkhttps://openproblems.bio/neurips_docs/data/dataset/