Supplementary Information: The LudP arrest peptide stalls translation by remodeling the ribosomal A-site

md_input folder:This folder contains all gromacs tpr files for simulations with wt and D133A LudP for replicas 1 to 10 and the three steps equilibration of solvent, release of position restraints and production. final_frames folder:This folder contrains gro files with the coordinates and velocities of all simulation system atoms for wt and D133A LudP and for all replicas. data_for_plots/U2506_U2585_pca folder:This folder containts the pyhton script "plot_U2506_U2585_pca_fig.py" to generate the plots for Fig. 8a,b. The pdbs for the highlighted MD conformations are in the subfoler pdbs. data_for_plots/pca_peptide_vdw_overlap folder:This folder containts the pyhton script "plot_pca_vs_overlap_hists_fig.py" to generate the plot for Fig. 8c. The pdbs for the highlighted MD conformations are in the subfoler pdbs.