Dataset for genome-wide association study of maize phosphorus efficiency
收藏DataCite Commons2025-04-01 更新2025-04-10 收录
下载链接:
https://datadryad.org/dataset/doi:10.5061/dryad.9cnp5hqs0
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资源简介:
This dataset comprises genotypic data derived from 398 genotypes of maize
(Zea mays), categorized into 100 Dent (maize_Dent), 100 Flint
(maize_Flint), and 198 doubled haploid Landraces (maize_LR) sourced from
six European lines. The data is provided in Variant Call Format (vcf),
with each population having its dedicated file, analyzed separately. The
vcf files contain meta-information lines, a header line, and subsequent
data lines detailing genomic positions. Meta-information is included post
the ## string. The header encompasses eight fixed fields per record,
tab-delimited and specifying information such as chromosome (CHROM),
position (POS), identifier (ID), reference base(s) (REF), alternate
base(s) (ALT), quality (QUAL), filter status (FILTER), and additional
information (INFO). Missing values are denoted by a dot ('.').
The data format includes a FORMAT field specifying data types and order,
followed by individual fields for each sample. Genotypes are encoded as
allele values separated by either '/' or '|'. This
dataset was employed in a genome-wide association study (GWAS) utilizing a
diversity panel to analyze Phosphorus use efficiency in these genotypes.
提供机构:
Dryad
创建时间:
2025-01-17



