Source code, license, example input and visualization files for beta-LTRANS-ADCIRC, a particle tracking model that runs with ADCIRC circulation model prediction.
收藏资源简介：
<p>From http://northweb.hpl.umces.edu/LTRANS.htm</p> <p><strong>beta-LTRANS-ADCIRC</strong> is based on the <strong>Larval TRANSport Lagrangian model (<a href=\"http://northweb.hpl.umces.edu/LTRANS.htm\">LTRANS v.2b</a>),</strong> an off-line particle-tracking model that runs with the stored predictions of a 3D hydrodynamic model. In this case, LTRANS v.2b has been substantially modified to be able to run with the finite-element circulation predictions of <a href=\"http://adcirc.org/\">ADCIRC</a>. Although LTRANS was built to simulate oyster larvae, it can easily be adapted to simulate passive particles and other planktonic organisms. LTRANS v.2 is written in Fortran 90 and is designed to track the trajectories of particles in three dimensions. It includes a 4th order Runge-Kutta scheme for particle advection and a random displacement model for vertical turbulent particle motion. Reflective boundary conditions, larval behavior, and settlement routines are also included. A brief description of the beta-LTRANS-ADCIRC particle-tracking model can be found <a href=\"http://northweb.hpl.umces.edu/LTRANS/LTRANS_description.pdf\">here</a> (68 KB .pdf). For more information on LTRANS, please see the LTRANS web page. and the application of LTRANS to oyster larvae transport, see <a href=\"http://northweb.hpl.umces.edu/research/Oyster_larvae_DNR.htm\">a summary web page with animations, </a>the publications<a href=\"http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Northetal2008\"> North et al. (2008, 2011</a>), and the <a href=\"http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Guide\">LTRANS v.2 User's Guide</a>. Please cite <a href=\"http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Northetal2008\">North et al. (2011)</a> when referring to LTRANS v.2b. The updates that were made for LTRANS v.2b are listed here.</p> <p>Elizabeth North of University of Maryland Center for Environmental Science Horn Point Laboratory implemented beta-LTRANS-ADCIRC. Funding was provided by the National Science Foundation Biological Oceanography Program. Steven Suttles and Jason Spires provided valuable assistance.</p> <p>beta-LTRANS-ADCIRC Code: beta-LTRANS-ADCIRC Open Source Code. We would appreciate knowing who is using LTRANS. If you would like to share this information with us, please send us your name, contact information, and a brief description of how you plan to use this model to <a href=\"mailto:enorth@umces.edu\">enorth@umces.edu</a> with 'LTRANS-ADCIRC' in the subject line.</p> <p><strong>Access restrictions:</strong> This software is open-source and licensed as stated by MIT/X License, but utilizes external dependencies and program which have different restrictions. Please see the beta-LTRANS-ADCIRC license file and website for more information.</p> <p><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS-ADCIRC_website.pdf\" target=\"_blank\">PDF of original beta-LTRANS-ADCIRC webpage</a>: http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS-ADCIRC_website.pdf</p> <p><strong>Code:</strong></p> <table border=\"0\"> <tbody> <tr> <td> <div><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS_ADCIRC_License.txt\" target=\"_blank\"><strong>betaLTRANS_ADCIRC_License.txt</strong></a></div> </td> <td><strong>License file</strong>. This license was based on the ROMS license. Please note that this license applies to all sections of beta-LTRANS-ADCIRC except those listed in the 'External Dependencies and Programs' section below. </td> </tr> <tr> <td> <div><strong><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS_ADCIRC.zip\">betaLTRANS-ADCIRC.zip</a><br /> <a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn//betaLTRANS_ADCIRC.tgz\">betaLTRANS-ADCIRC.tgz </a></strong><br /> </div> </td> <td><br /> <strong>Code and Input Files</strong>. This zip or tarball file contains the beta-LTRANS-ADCIRC code, license, example input and visualization files. Section II of the <a href=\"http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Guide\">LTRANS v.2 User's Guide</a> contains instructions for setting up and running LTRANS v.2b in Linux and Windows environments. Before using this model, please read the <strong>External Dependencies and Programs</strong> section below. This version of LTRANS is parameterized to run with the input files from a test case of ADCIRC which was set up for Shinnecock Inlet. These ADCIRC files are provided in this zip/tar file.</td> </tr> </tbody> </table> <p> </p> <p><strong>External Dependencies and Programs</strong>. beta-LTRANS-ADCIRC requires NetCDF libraries and uses the following programs to calculate random numbers (Mersenne Twister) and fit tension splines (TSPACK). Because beta-LTRANS-ADCIRC reads-in ADCIRC-generated NetCDF (.nc) files, it requires that the appropriate NetCDF libraries be installed on your computer (see files and links below). Also, please note that although the Mersenne Twister and TSPACK programs are included in the beta-LTRANS-ADCIRC in the Random_module.f90 and Tension_module.f90, respectively, they do not share the same license file as beta-LTRANS-ADCIRC Please review and respect their permissions (links and instructions provided below).</p> <table border=\"0\"> <tbody> <tr> <td> <div><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/VF-NetCDF.zip\"><strong>VF-NetCDF.zip</strong></a></div> </td> <td><br /> <strong>Windows Visual Fortran NetCDF libraries</strong>. These NetCDF files that are compatible with Visual Fortran were downloaded from the <a href=\"http://www.unidata.ucar.edu/software/netcdf/binaries.html\">Unidata NetCDF Binaries</a> Website for LTRANS v.1. The NetCDF 90 files were downloaded from <a href=\"http://www.unidata.ucar.edu/software/netcdf/docs/other-builds.html#windows_ifort_f90\">Building the F90 API for Windows for the Intel ifort compiler</a>website. The VF-NetCDF.zip folder contains README.txt that describes where to place the enclosed files. If these files do not work, you may have to download updated versions or build your own by following the instructions at the <a href=\"http://www.unidata.ucar.edu/software/netcdf/\">UCAR Unidata NetCDF website</a>. <br /> </td> </tr> <tr> <td> <div><a href=\"http://www.unidata.ucar.edu/software/netcdf/\" target=\"_blank\"><strong>NetCDF website</strong></a></div> </td> <td><br /> <strong>Linux NetCDF libraries</strong>. Linux users will likely have to build their own Fortran 90 libraries using the source code/binaries that are available on the <a href=\"http://www.unidata.ucar.edu/software/netcdf/\">UCAR Unidata NetCDF website</a>.<br /> </td> </tr> <tr> <td> <div><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/FORTRAN_mt19937ar.f\"><strong>mt19937ar.f</strong></a></div> </td> <td><br /> <strong>Mersenne Twister random number generator</strong>. This program was recoded into F90 and included in the Random_module.f90 in LTRANS. See the <a href=\"http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html\">Mersenne Twister Home Page</a> for more information about this open source program. If you plan to use this program in LTRANS, please send an email to: m-mat @ math.sci.hiroshima-u.ac.jp (remove space) to inform the developers as a courtesy. <br /> </td> </tr> <tr> <td> <div><strong><a href=\"http://portal.acm.org/citation.cfm?id=151277\" target=\"_blank\">TSPACK</a></strong><a href=\"http://portal.acm.org/citation.cfm?id=151277\" target=\"_blank\"><strong> website</strong></a></div> </td> <td><br /> <strong>TSPACK</strong>: <strong>tension spline curve-fitting package</strong>. This program (ACM TOMS Algorithm 716) was created by <a href=\"http://www.cse.unt.edu/~renka/\">Robert J. Renka</a> and is used in LTRANS as part of the water column profile interpolation technique. The original TSPACK code can be found at the link to the left and is copyrighted by the <a href=\"http://www.acm.org/\">Association for Computing Machinery (ACM)</a>. With the permission of Dr. Renka and ACM, TSPACK was modified for use in LTRANS by removing unused code and call variables and updating it to Fortran 90. The modified version of TSPACK is included in the LTRANS source code in the Tension Spline Module (tension_module.f90). If you would like to use LTRANS with the modified TSPACK software, please read and respect the <a href=\"http://www.acm.org/publications/policies/softwarecrnotice\">ACM Software Copyright and License Agreement</a>. For noncommercial use, ACM grants \"a royalty-free, nonexclusive right to execute, copy, modify and distribute both the binary and source code solely for academic, research and other similar noncommercial uses\" subject to the conditions noted in the license agreement. Note that if you plan commercial use of LTRANS with the modified TSPACK software, you must contact ACM at <a href=\"mailto:permissions@acm.org\">permissions@acm.org</a> to arrange an appropriate license. It may require payment of a license fee for commercial use.</td> </tr> </tbody> </table> <p> </p> <table border=\"0\"> <tbody> <tr> <td>beta-LTRANS-ADCIRC <strong>Utilities</strong>. The following programs were developed to run LTRANS v.2 or visualize LTRANS v.2 model output. Unless specified otherwise within the program code, these open source programs are considered part of LTRANS and fall under the beta-LTRANS-ADCIRC license. Many thanks to LTRANS users who have made these contributions! If you would like to share a LTRANS utility or your modifications/additions to LTRANS source code, please send them to <a href=\"mailto:enorth@umces.edu\">enorth@umces.edu</a>.</td> </tr> </tbody> </table> <table border=\"0\"> <tbody> <tr> <td> <div><strong><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/LTRANS_v2_visualization_ADCIRC_closeup.BAS\">LTRANS-ADCIRC_viz.BAS</a></strong><br /> <br /> <strong><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS_ADCIRC_End_polygons.bln\">End_polygons.bln</a></strong></div> </td> <td><br /> <strong>Surfer/Scripter code for visualizing beta-LTRANS-ADCIRC output</strong> developed by E. W. North. The .BAS file is the program and associated .bln files are needed to visualize the location of bottom habitat. <a href=\"http://northweb.hpl.umces.edu/LTRANS/betaLTRANS_ADCIRC/betaLTRANS-ADCIRC_test.wmv\">Here is an example animation (MB) of LTRANS v.2 model output made with Surfer</a> using the code and example input files provided above. Surfer is a Windows program for contouring and 3D surface mapping. Scripter is an object oriented scripting language (Active X Automation) that comes with, and automates, Surfer. Information on Surfer is available <a href=\"http://www.goldensoftware.com/products/surfer/surfer.shtml\">here</a> and a free demo is available <a href=\"http://www.goldensoftware.com/demo.shtml\">here</a>. Please note that the demo version will not allow export so it is likely that you will not be able to use the demo version to create .gif files for animations. <br /> </td> </tr> <tr> <td> <div><strong>OceanView in R</strong></div> </td> <td> <p>OceanView, created by Dr. Karline Soetaert, is a set of R functions for visualizing 2-D and 3-D oceanographic data and model output. The package is on the official R site:<a href=\"http://cran.r-project.org/web/packages/OceanView\">http://cran.r-project.org/web/packages/OceanView</a>. There is also a short manual with snapshots of the visualization functions, some of which use LTRANS output as examples:<a href=\"http://cran.r-project.org/web/packages/OceanView/vignettes/OceanView.pdf\">http://cran.r-project.org/web/packages/OceanView/vignettes/OceanView.pdf</a>.</p> </td> </tr> <tr> <td><strong><a href=\"http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/LTRANS-v2_plot_results.M\">plot_results.m</a></strong></td> <td><strong>MATLAB code for visualizing LTRANS v.2b output. </strong>Here is Matlab M-file which was designed by Yong Kim for LTRANS v.1 and adapted for LTRANS v.2b by Elizabeth North. It should work with beta-LTRANS-ADCIRC It makes a 3D plot of the model bathymetry (from .nc input grid file) and particle locations from LTRANS v.2b .csv output files. <a href=\"http://northweb.hpl.umces.edu/LTRANS/LTRANS-v2/LTRANS-matlab.wmv\">Here is an example animation (MB) of LTRANS v.2b model output made with MATLAB</a>. </td> </tr> </tbody> </table> <p><strong>LTRANS User's Guide and beta-LTRANS-ADCIRC Description (see Related Publicatsion section):</strong><br /> Please send comments or suggestions regarding the User's Guide to <a href=\"mailto:enorth@umces.edu\">enorth@umces.edu</a>. They will be posted on the list of known LTRANS v.2 bugs and solutions (northweb.hpl.umces.edu/LTRANS/LTRANS-v2b/LTRANSv2b%20bugs%20and%20solutions.txt)</p>
<p>来源：http://northweb.hpl.umces.edu/LTRANS.htm</p> <p><strong>beta-LTRANS-ADCIRC</strong> 基于<strong>幼虫输运拉格朗日模型（Larval TRANSport Lagrangian model, LTRANS v.2b）</strong>，这是一款离线粒子追踪模型，可依托三维水动力模型的存储预测结果运行。本场景中，LTRANS v.2b经过大幅修改，可适配ADCIRC（<a href="http://adcirc.org/">http://adcirc.org/</a>）的有限元环流预测结果。尽管LTRANS最初为模拟牡蛎幼虫而开发，但可轻松适配被动粒子与其他浮游生物的模拟。LTRANS v.2采用Fortran 90编程语言编写，旨在追踪三维粒子的运动轨迹，内置用于粒子平流的四阶龙格-库塔（Runge-Kutta）格式，以及用于模拟垂直湍流粒子运动的随机位移模型。此外还包含反射边界条件、幼虫行为与沉降子程序。beta-LTRANS-ADCIRC粒子追踪模型的简要说明可参见此处（68 KB .pdf）：<a href="http://northweb.hpl.umces.edu/LTRANS/LTRANS_description.pdf">此处</a>。有关LTRANS的更多信息，请参阅LTRANS官方网页；有关LTRANS在牡蛎幼虫输运中的应用，请参阅<a href="http://northweb.hpl.umces.edu/research/Oyster_larvae_DNR.htm">含动画的汇总网页</a>、文献<a href="http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Northetal2008">North等人（2008, 2011）</a>，以及<a href="http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Guide">LTRANS v.2用户指南</a>。当引用LTRANS v.2b时，请标注North等人（2011）。LTRANS v.2b的更新内容列于此。</p> <p>马里兰大学环境科学中心霍恩角实验室的Elizabeth North开发实现了beta-LTRANS-ADCIRC。本项目由美国国家科学基金会生物海洋学项目提供资助。Steven Suttles与Jason Spires提供了宝贵的技术协助。</p> <p>beta-LTRANS-ADCIRC代码：beta-LTRANS-ADCIRC开源代码。我们希望了解LTRANS的使用者情况。若您愿意告知相关信息，请将您的姓名、联系方式以及您计划使用该模型的简要说明，以主题行包含"LTRANS-ADCIRC"的邮件发送至<a href="mailto:enorth@umces.edu">enorth@umces.edu</a>。</p> <p><strong>访问限制：</strong>本软件为开源软件，采用MIT/X许可证授权，但依赖的外部程序具有不同的使用限制。请参阅beta-LTRANS-ADCIRC许可证文件与官方网页获取更多信息。</p> <p><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS-ADCIRC_website.pdf" target="_blank">原始beta-LTRANS-ADCIRC网页PDF版本</a>：http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS-ADCIRC_website.pdf</p> <p><strong>代码：</strong></p> <table border="0"> <tbody> <tr> <td> <div><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS_ADCIRC_License.txt" target="_blank"><strong>betaLTRANS_ADCIRC_License.txt</strong></a></div> </td> <td><strong>许可证文件</strong>。本许可证基于ROMS许可证制定。请注意，本许可证适用于beta-LTRANS-ADCIRC的所有模块，除下文“外部依赖与程序”章节中列出的部分外。</td> </tr> <tr> <td> <div><strong><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS-ADCIRC.zip">betaLTRANS-ADCIRC.zip</a><br /> <a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn//betaLTRANS_ADCIRC.tgz">betaLTRANS-ADCIRC.tgz</a></strong><br /> </div> </td> <td><br /> <strong>代码与输入文件</strong>。该压缩包（ZIP或tarball格式）包含beta-LTRANS-ADCIRC代码、许可证、示例输入与可视化文件。<a href="http://northweb.hpl.umces.edu/LTRANS-ADCIRC.htm#Guide">LTRANS v.2用户指南</a>的第二章包含在Linux与Windows环境下搭建并运行LTRANS v.2b的操作说明。使用本模型前，请阅读下文“外部依赖与程序”章节。本版本的LTRANS已参数化，可适配为辛内科克湾（Shinnecock Inlet）测试案例生成的ADCIRC输入文件，该ADCIRC文件已包含在本压缩包中。</td> </tr> </tbody> </table> <p> </p> <p><strong>外部依赖与程序</strong>。beta-LTRANS-ADCIRC需要NetCDF库，并使用以下程序生成随机数（梅森旋转算法，Mersenne Twister）与拟合张力样条（TSPACK）。由于beta-LTRANS-ADCIRC读取ADCIRC生成的NetCDF（.nc）文件，因此需要在您的计算机上安装对应的NetCDF库（详见下文文件与链接）。另外请注意，尽管梅森旋转算法与TSPACK程序已分别包含在beta-LTRANS-ADCIRC的Random_module.f90与Tension_module.f90文件中，但它们的许可证与beta-LTRANS-ADCIRC并不相同。请查阅并遵守其使用权限（相关链接与说明见下文）。</p> <table border="0"> <tbody> <tr> <td> <div><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/VF-NetCDF.zip"><strong>VF-NetCDF.zip</strong></a></div> </td> <td><br /> <strong>Windows Visual Fortran NetCDF库</strong>。这些适配Visual Fortran的NetCDF文件源自<a href="http://www.unidata.ucar.edu/software/netcdf/binaries.html">Unidata NetCDF二进制文件官网</a>，用于LTRANS v.1。NetCDF 90文件源自<a href="http://www.unidata.ucar.edu/software/netcdf/docs/other-builds.html#windows_ifort_f90">为Intel ifort编译器构建Windows版F90 API</a>官网。VF-NetCDF.zip文件夹包含README.txt文件，说明如何放置压缩包内的文件。若这些文件无法正常工作，您可能需要下载更新版本，或按照<a href="http://www.unidata.ucar.edu/software/netcdf/">UCAR Unidata NetCDF官网</a>的说明自行编译。<br /> </td> </tr> <tr> <td> <div><a href="http://www.unidata.ucar.edu/software/netcdf/" target="_blank"><strong>NetCDF官网</strong></a></div> </td> <td><br /> <strong>Linux NetCDF库</strong>。Linux用户通常需要根据<a href="http://www.unidata.ucar.edu/software/netcdf/">UCAR Unidata NetCDF官网</a>提供的源代码/二进制文件自行编译Fortran 90库。<br /> </td> </tr> <tr> <td> <div><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/FORTRAN_mt19937ar.f"><strong>mt19937ar.f</strong></a></div> </td> <td><br /> <strong>梅森旋转随机数生成器</strong>。该程序已被重写为F90格式，并包含在LTRANS的Random_module.f90文件中。有关该开源程序的更多信息，请参阅<a href="http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/emt.html">梅森旋转官网</a>。若您计划在LTRANS中使用该程序，请礼貌性地发送邮件至：m-mat @ math.sci.hiroshima-u.ac.jp（移除空格）以告知开发者。<br /> </td> </tr> <tr> <td> <div><strong><a href="http://portal.acm.org/citation.cfm?id=151277" target="_blank">TSPACK</a><a href="http://portal.acm.org/citation.cfm?id=151277" target="_blank">官网</a></strong></div> </td> <td><br /> <strong>TSPACK：张力样条曲线拟合工具包</strong>。该程序（ACM TOMS算法716）由<a href="http://www.cse.unt.edu/~renka/">Robert J. Renka</a>开发，作为LTRANS的水柱剖面插值技术的一部分被使用。原始TSPACK代码可通过左侧链接获取，版权归<a href="http://www.acm.org/">美国计算机协会（Association for Computing Machinery, ACM）</a>所有。经Renka博士与ACM许可，TSPACK已针对LTRANS进行修改：移除未使用的代码与调用变量，并升级为Fortran 90格式。修改后的TSPACK版本已包含在LTRANS源代码的张力样条模块（tension_module.f90）中。若您希望在LTRANS中使用修改后的TSPACK软件，请阅读并遵守<a href="http://www.acm.org/publications/policies/softwarecrnotice">ACM软件版权与许可证协议</a>。对于非商业用途，ACM授予“免版权费、非排他性的执行、复制、修改与分发二进制及源代码的权利，仅可用于学术、研究及其他类似非商业用途”，但需遵守许可证协议中的条款。请注意，若您计划将LTRANS与修改后的TSPACK软件用于商业用途，必须联系ACM的<a href="mailto:permissions@acm.org">permissions@acm.org</a>以获取合适的许可证，商业使用可能需要支付许可证费用。</td> </tr> </tbody> </table> <p> </p> <table border="0"> <tbody> <tr> <td>beta-LTRANS-ADCIRC <strong>工具</strong>。以下程序专为运行LTRANS v.2或可视化LTRANS v.2模型输出而开发。除非程序代码中另有说明，这些开源程序属于LTRANS的一部分，受beta-LTRANS-ADCIRC许可证约束。感谢所有为LTRANS贡献这些工具的用户！若您希望分享LTRANS工具或您对LTRANS源代码的修改/新增内容，请将其发送至<a href="mailto:enorth@umces.edu">enorth@umces.edu</a>。</td> </tr> </tbody> </table> <table border="0"> <tbody> <tr> <td> <div><strong><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/LTRANS_v2_visualization_ADCIRC_closeup.BAS">LTRANS-ADCIRC_viz.BAS</a></strong><br /> <br /> <strong><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/betaLTRANS_ADCIRC_End_polygons.bln">End_polygons.bln</a></strong></div> </td> <td><br /> <strong>由E. W. North开发的用于可视化beta-LTRANS-ADCIRC输出的Surfer/Scripter代码</strong>。.BAS文件为程序本体，.bln文件用于可视化底栖生境的位置。<a href="http://northweb.hpl.umces.edu/LTRANS/betaLTRANS_ADCIRC/betaLTRANS-ADCIRC_test.wmv">此处提供使用上述代码与示例输入文件生成的LTRANS v.2模型输出动画示例（MB）</a>。Surfer是一款用于绘制等值线与三维表面映射的Windows程序，Scripter是随Surfer附带的面向对象脚本语言（Active X自动化），可实现Surfer的自动化操作。有关Surfer的详细信息可参见<a href="http://www.goldensoftware.com/products/surfer/surfer.shtml">此处</a>，免费试用版可参见<a href="http://www.goldensoftware.com/demo.shtml">此处</a>。请注意，试用版无法导出文件，因此您可能无法使用试用版生成用于动画的.gif文件。<br /> </td> </tr> <tr> <td> <div><strong>R语言中的OceanView</strong></div> </td> <td> <p>OceanView由Karline Soetaert博士开发，是一套用于可视化二维与三维海洋学数据及模型输出的R函数集。该包已收录于R官方网站：<a href="http://cran.r-project.org/web/packages/OceanView">http://cran.r-project.org/web/packages/OceanView</a>。同时还有一份包含可视化功能截图的简短手册，其中部分功能以LTRANS输出作为示例：<a href="http://cran.r-project.org/web/packages/OceanView/vignettes/OceanView.pdf">http://cran.r-project.org/web/packages/OceanView/vignettes/OceanView.pdf</a>。</p> </td> </tr> <tr> <td><strong><a href="http://dmoserv3.bco-dmo.org/data_docs/EstuarineMetaDyn/LTRANS-v2_plot_results.M">plot_results.m</a></strong></td> <td><strong>用于可视化LTRANS v.2b输出的MATLAB代码</strong>。该Matlab M文件由Yong Kim为LTRANS v.1设计，后由Elizabeth North适配至LTRANS v.2b，可兼容beta-LTRANS-ADCIRC。该代码可基于.nc输入网格文件生成模型水深的三维绘图，并基于LTRANS v.2b的.csv输出文件绘制粒子位置。<a href="http://northweb.hpl.umces.edu/LTRANS/LTRANS-v2/LTRANS-matlab.wmv">此处提供使用MATLAB生成的LTRANS v.2b模型输出动画示例（MB）</a>。</td> </tr> </tbody> </table> <p><strong>LTRANS用户指南与beta-LTRANS-ADCIRC说明（参见相关文献章节）：</strong><br /> 请将用户指南的评论或建议发送至<a href="mailto:enorth@umces.edu">enorth@umces.edu</a>。相关内容将被发布于LTRANS v.2已知缺陷与解决方案列表（northweb.hpl.umces.edu/LTRANS/LTRANS-v2b/LTRANSv2b%20bugs%20and%20solutions.txt）</p>
