Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape

SOURCE DATA:

Data from the manuscript of Springstein et al., "Repurposing of a DNA segregation machinery into a cytoskeletal system controlling cell shape”.

- Alignments/
- Cyanobacteria_species.aln
Concatenation of the multiple sequence alignments of the RNA polymerase β and β′ subunit protein sequences from all Cyanobacteria species in the dataset, used to reconstruct a species phylogeny of the Cyanobacteria phylum.

- ParM_Bacteria.aln
Multiple sequence alignment of representative ParM proteins identified across all bacterial phyla.

- ParM_ParR_Cyanobacteria.aln
Concatenation of the multiple sequence alignments of ParM and ParR protein sequences identified in Cyanobacteria.

- Phylogenies/
- Cyanobacteria_species.treefile
Species phylogeny of Cyanobacteria (in Newick format).

- Cyanobacteria_species.pdf
Species phylogeny of Cyanobacteria (in pdf format with annotations).

- ParM_Bacteria.treefile
Phylogeny of ParM proteins identified across all bacterial phyla (in Newick format).

- ParM_Bacteria.pdf
Phylogeny of ParM proteins identified across all bacterial phyla (in pdf format with annotations).

- ParM_ParR_Cyanobacteria.treefiles
Phylogeny of the concatenation of ParM and ParR proteins identified in Cyanobacteria (in Newick format).

- ParM_ParR_Cyanobacteria.pdf
Phylogeny of the concatenation of ParM and ParR proteins identified in Cyanobacteria (in pdf format with annotations).

- Profiles/
- RNApolB.hmm
HMM profile used for the identification of RNA polymerase β proteins in the Cyanobacteria genomes.

- RNApolBp.hmm
HMM profile used for the identification of RNA polymerase β′ proteins in the Cyanobacteria genomes.

- ParM.hmm
HMM profile used for the identification of ParM proteins in bacterial genomes.

- ParR.hmm
HMM profile used for the identification of ParR proteins in bacterial genomes.