Top allelic association hits in the GWAS for QTL affecting commercially important traits.

ap-values were calculated using χ2 tests in an allelic association study.bThe positions of the associated SNPs on the latest version of the pig reference genome were determined by BLAST searches with the flanking sequences of the SNPs as provided by illumina with respect to the Sscrofa 10.2 assembly. Some of the flanking sequences did not give a significant BLAST hit with respect to this genome reference sequence.