Identifying Spatial Co-occurrence in Healthy and InflAmed tissues (ISCHIA)

Integrated IBD scRNASeq reference: Seurat object and cell type markers. Molecular Cartography (Resolve) data data of human colon samples. 6 ulcerative colitis colon resections: 3 inflamed, 3 non-inflamed areas (4 patients in total). Segmented object (Seurat), and imaging data used for figures: B2-1 and C1-2 (healthy samples), C2-1 and C1-4 (inflamed samples) Visium (10X) spatial transcriptomics data of human colon samples. 4 ulcerative colitis colon resections: 2 inflamed, 2 non-inflamed areas (3 patients in total). Supplementary Table 1: positively co-occurring ligands and receptors in composition class 5.