Additional file 2 of Estimation of delay to diagnosis and incidence in HIV using indirect evidence of infection dates

R script (viewable as plain text) to read in parameter estimates for the calibration dataset and to then simulate a cohort of patients with increasing incidence of HIV and a limited observation window for diagnoses. The same R script fits an ‘incidence and delay-to-diagnosis’ model to the generated data using a Stan model template file provided. (R 17 kb)