Data from: Identifying conserved genomic elements and designing universal bait sets to enrich them

Arachnida Bait Design and Testing FilesThe ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Arachnids. The *-design-steps.md file is a description of the design steps followed for the group. The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group. The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing. The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file. The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file. The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.arachnida.zipArachnida-UCE-1.1K-v1 Bait DesignA target enrichment probe set designed from 1,120 UCE loci identified among arachnids. This is a ZIP archive of a FASTA file that is ready for submission of the probe set for synthesis.Arachnida-UCE-1.1K-v1.fasta.zipColeoptera Bait Design and Testing FilesThe ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Coleoptera. The *-design-steps.md file is a description of the design steps followed for the group. The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group. The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing. The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file. The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file. The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.coleoptera.zipColeoptera-UCE-1.1K-v1 Bait DesignA target enrichment probe set designed from 1,172 UCE loci identified among Coleoptera. This is a ZIP archive of a FASTA file that is ready for submission of the probe set for synthesis.Coleoptera-UCE-1.1K-v1.fasta.zipDiptera Bait Design and Testing FilesThe ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Diptera. The *-design-steps.md file is a description of the design steps followed for the group. The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group. The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing. The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file. The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file. The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.diptera.zipDiptera-UCE-2.7K-v1 Bait DesignA target enrichment probe set designed from 2,711 UCE loci identified among Diptera. This is a ZIP archive of a FASTA file that is ready for submission of the probe set for synthesis.Diptera-UCE-2.7K-v1.fasta.zipHemiptera Bait Design and Testing FilesThe ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Hemiptera. The *-design-steps.md file is a description of the design steps followed for the group. The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group. The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing. The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file. The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file. The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.hemiptera.zipHemiptera-UCE-2.7K-v1 Bait DesignA target enrichment probe set designed from 2,731 UCE loci identified among Hemiptera. This is a ZIP archive of a FASTA file that is ready for submission of the probe set for synthesis.Hemiptera-UCE-2.7K-v1.fasta.zipLepidoptera Bait Design and Testing FilesThe ZIP archive contains the files used to identify, design, and test probes targeting conserved loci in Lepidoptera. The *-design-steps.md file is a description of the design steps followed for the group. The "BAM" directory contains mappings of real/simulated reads to the base genome sequence for the group. The "BED" directory contains BAM files converted to BED, as well as intermediate BED files created during BED processing. The "BED" directory also contains the database of putatively conserved loci in the exemplar+base genome taxa, and the temporary probe design file. The "*-probes" directory contains the database of temporary probe mappings to exemplar taxa, several intermediate files, and the principal probe design file. The "in-silico-test" directory contains all data from in-silico testing of the principal probe design file.lepidoptera.zipLepidoptera-UCE-1.3K-v1 Bait DesignA target enrichment probe set designed from 1,381 UCE loci identified among Lepidoptera. This is a ZIP archive of a FASTA file that is ready for submission of the probe set for synthesis.Lepidoptera-UCE-1.3K-v1.fasta.zip

蛛形纲（Arachnida）诱饵设计与测试文件集：
该ZIP压缩包包含用于鉴定、设计并测试针对蛛形纲物种保守位点的探针所需的全部文件。其中`*-design-steps.md`文件为该类群的探针设计步骤说明文档。`BAM`目录存储了该类群的真实/模拟测序读段与参考基因组序列的比对结果文件。`BED`目录包含转换为BED格式的BAM文件，以及BED格式文件处理过程中生成的中间文件。此外，`BED`目录还存储了模式物种+参考基因组类群中推定保守位点的数据库，以及临时探针设计文件。`*-probes`目录包含模式物种的临时探针比对数据库、若干中间文件以及核心探针设计文件。`in-silico-test`目录存储了针对核心探针设计文件的全部计算机模拟测试数据。对应文件包为`arachnida.zip`。

蛛形纲-UCE-1.1K-v1诱饵设计：
该靶向富集探针组基于在蛛形纲物种中鉴定出的1120个超保守元件（Ultra-Conserved Element，UCE）位点设计而成。本ZIP压缩包内包含可直接提交合成的FASTA格式探针序列文件，对应文件为`Arachnida-UCE-1.1K-v1.fasta.zip`。

鞘翅目（Coleoptera）诱饵设计与测试文件集：
该ZIP压缩包包含用于鉴定、设计并测试针对鞘翅目物种保守位点的探针所需的全部文件。其中`*-design-steps.md`文件为该类群的探针设计步骤说明文档。`BAM`目录存储了该类群的真实/模拟测序读段与参考基因组序列的比对结果文件。`BED`目录包含转换为BED格式的BAM文件，以及BED格式文件处理过程中生成的中间文件。此外，`BED`目录还存储了模式物种+参考基因组类群中推定保守位点的数据库，以及临时探针设计文件。`*-probes`目录包含模式物种的临时探针比对数据库、若干中间文件以及核心探针设计文件。`in-silico-test`目录存储了针对核心探针设计文件的全部计算机模拟测试数据。对应文件包为`coleoptera.zip`。

鞘翅目-UCE-1.1K-v1诱饵设计：
该靶向富集探针组基于在鞘翅目物种中鉴定出的1172个UCE位点设计而成。本ZIP压缩包内包含可直接提交合成的FASTA格式探针序列文件，对应文件为`Coleoptera-UCE-1.1K-v1.fasta.zip`。

双翅目（Diptera）诱饵设计与测试文件集：
该ZIP压缩包包含用于鉴定、设计并测试针对双翅目物种保守位点的探针所需的全部文件。其中`*-design-steps.md`文件为该类群的探针设计步骤说明文档。`BAM`目录存储了该类群的真实/模拟测序读段与参考基因组序列的比对结果文件。`BED`目录包含转换为BED格式的BAM文件，以及BED格式文件处理过程中生成的中间文件。此外，`BED`目录还存储了模式物种+参考基因组类群中推定保守位点的数据库，以及临时探针设计文件。`*-probes`目录包含模式物种的临时探针比对数据库、若干中间文件以及核心探针设计文件。`in-silico-test`目录存储了针对核心探针设计文件的全部计算机模拟测试数据。对应文件包为`diptera.zip`。

双翅目-UCE-2.7K-v1诱饵设计：
该靶向富集探针组基于在双翅目物种中鉴定出的2711个UCE位点设计而成。本ZIP压缩包内包含可直接提交合成的FASTA格式探针序列文件，对应文件为`Diptera-UCE-2.7K-v1.fasta.zip`。

半翅目（Hemiptera）诱饵设计与测试文件集：
该ZIP压缩包包含用于鉴定、设计并测试针对半翅目物种保守位点的探针所需的全部文件。其中`*-design-steps.md`文件为该类群的探针设计步骤说明文档。`BAM`目录存储了该类群的真实/模拟测序读段与参考基因组序列的比对结果文件。`BED`目录包含转换为BED格式的BAM文件，以及BED格式文件处理过程中生成的中间文件。此外，`BED`目录还存储了模式物种+参考基因组类群中推定保守位点的数据库，以及临时探针设计文件。`*-probes`目录包含模式物种的临时探针比对数据库、若干中间文件以及核心探针设计文件。`in-silico-test`目录存储了针对核心探针设计文件的全部计算机模拟测试数据。对应文件包为`hemiptera.zip`。

半翅目-UCE-2.7K-v1诱饵设计：
该靶向富集探针组基于在半翅目物种中鉴定出的2731个UCE位点设计而成。本ZIP压缩包内包含可直接提交合成的FASTA格式探针序列文件，对应文件为`Hemiptera-UCE-2.7K-v1.fasta.zip`。

鳞翅目（Lepidoptera）诱饵设计与测试文件集：
该ZIP压缩包包含用于鉴定、设计并测试针对鳞翅目物种保守位点的探针所需的全部文件。其中`*-design-steps.md`文件为该类群的探针设计步骤说明文档。`BAM`目录存储了该类群的真实/模拟测序读段与参考基因组序列的比对结果文件。`BED`目录包含转换为BED格式的BAM文件，以及BED格式文件处理过程中生成的中间文件。此外，`BED`目录还存储了模式物种+参考基因组类群中推定保守位点的数据库，以及临时探针设计文件。`*-probes`目录包含模式物种的临时探针比对数据库、若干中间文件以及核心探针设计文件。`in-silico-test`目录存储了针对核心探针设计文件的全部计算机模拟测试数据。对应文件包为`lepidoptera.zip`。

鳞翅目-UCE-1.3K-v1诱饵设计：
该靶向富集探针组基于在鳞翅目物种中鉴定出的1381个UCE位点设计而成。本ZIP压缩包内包含可直接提交合成的FASTA格式探针序列文件，对应文件为`Lepidoptera-UCE-1.3K-v1.fasta.zip`。