Additional file 4 of Large-scale gene network analysis reveals the significance of extracellular matrix pathway and homeobox genes in acute myeloid leukemia: an introduction to the Pigengene package and its applications

Table S3. Enrichment in AML-associated genes. The enrichment of modules in genes associated with AML is reported as part of the online supplementary materials. Miller et al,. systematically surveyed 25 published reports of gene expression profiling in AML [81]. We used this survey to score the modules based on their know association with AML. For instance, the # of Reported Genes-2 and Score-2 columns respectively report the number and the percentage of genes in each module that were reported to be related to AML in at least 2 studies according to Miller et al,. survey. The Module ID, Module Size, and the most overrepresented pathway in each module are also reported. These data are plotted in Additional file 1: Figure S4. (XLS 39.5 kb)