ProtFunAgent: Structured Ontology Reasoning for Protein Function Annotation
收藏DataCite Commons2026-05-07 更新2026-05-07 收录
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https://zenodo.org/doi/10.5281/zenodo.20064513
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资源简介：
Anonymous reproducibility artifacts for the NeurIPS 2026 submission:
“ProtFunAgent: Structured Ontology Reasoning for Protein Function Annotation”
This repository contains the core evaluation, ontology-processing, retrieval, and prompting components used in ProtFunAgent, including:
- GO prediction evaluation scripts- Hierarchical ontology evaluation- Ontology-aware decoding and pruning- UniProt ontology processing utilities- Retrieval-augmented homology context generation- Prompt templates used for synthesis and verification- Benchmark evaluation pipeline
Included files:- evaluate_go.py- evaluate_go_hier.py- evaluate_text.py- evaluate_all.py- ontology_decode.py- make_go_map.py- uniprot_ontology_v2.py- uniprot_prompts.py- homology_rag.py
The repository is provided for anonymous peer-review reproducibility purposes and accompanies the corresponding NeurIPS submission.
提供机构：
Zenodo
创建时间：
2026-05-07
