Additional file 2 of Clinical laboratory test-wide association scan of polygenic scores identifies biomarkers of complex disease

Additional file 2: Contains all supplementary tables. Table S1. Descriptive statistics generated by the QualityLab pipeline. Table S2. Lipid-altering medications abstracted from free text in clinical notes. Table S3. Characteristics of patients with clean lab and genotyping data. Table S4. Estimates of SNP-based heritability and sample sizes for all labs passing QualityLab using REML. Table S5. Estimates of SNP-based heritability for blood lipid levels across study populations and estimation methods. Table S6. LabWAS of HDLPGS in the European sample in BioVU. Table S7. LabWAS of HDLPGS in the African sample in BioVU. Table S8. LabWAS of LDLPGS in the European sample in BioVU. Table S9. LabWAS of LDLPGS in the African sample in BioVU. Table S10. LabWAS of TGPGS in the European sample in BioVU. Table S11. LabWAS of TGPGS in the African sample in BioVU. Table S12. LabWAS of CADPGS in the European sample in BioVU. Table S13. LabWAS of CADPGS in the European sample in BioVU controlling for CAD diagnosis. Table S14. LabWAS of CADPGS in the African sample in BioVU. Table S15. LabWAS of CADPGS in the African sample in BioVU controlling for CAD diagnosis. Table S16. LabWAS of CAD diagnosis in the European sample in BioVU. Table S17. LabWAS of HDLPGS in the European sample in MGB. Table S18. LabWAS of LDLPGS in the European sample in MGB. Table S19. LabWAS of TGPGS in the European sample in MGB. Table S20. LabWAS of CADPGS in the European sample in MGB. Table S21. LabWAS of CADPGS in the European sample in MGB controlling for CAD diagnosis. Table S22. The GWAS Catalog study accession numbers for summary statistics from GWAS of each lab trait.