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Refined Coordinate Structures and Pocket Analyses for Hematology and Coagulation Targets

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Zenodo2026-07-03 更新2026-08-13 收录
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Dataset Title: Refined Coordinate Structures and Pocket Analyses for Hematology and Coagulation Targets Overview: Focuses on key clotting factors and oxygen transport proteins (e.g., F8, F9, HBB). Mapped pocket configurations allow the design of chaperone molecules that stabilize mutant enzymes, restoring coagulation or oxygen-binding activity in hematological diseases. Computational Methodology: Target structures are optimized using the NRC CASP-17 Pure Math Folding Engine. This pipeline applies C-alpha harmonic guide potential constraints ($k_{guide} = 0.5$) for comparative modeling (or $k_{guide} = 0.0$ for ab-initio modeling), followed by sidechain relaxation and pocket expansion simulations to identify allosteric and active cavities. All coordinates are audited using the Trageser Tensor Theorem (TTT-7) lattice-parity verification to eliminate steric clashes (minimum inter-atomic distance > 1.10 Å) and loop hallucinations. License: Distributed under Creative Commons Attribution 4.0 International (CC BY 4.0) to enable open, commercial, and academic therapeutic drug design. Principal Investigator: James Paul Trageser Affiliation: Nexus Resonance Codex ORCID: 0009-0006-6678-2908 X (Twitter): @jtrag Repository: https://GitHub.com/Nexus-Resonance-Codex/Drug-Discovery

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Zenodo
创建时间:
2026-07-02
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