Public metagenome datasets annotated using SingleM

These data underlie the community profiles shown at https://sandpiper.qut.edu.au They are in "unfilled SingleM condensed" format. You may wish to convert them to use relative abundances, etc. using singlem summarise --output-taxonomic-profile-with-extras, which operates without loading the entire profile into memory (unlike some other conversions of the summarise command). For more details and information, see https://wwood.github.io/singlem/tools/summarise. Changelog version 1.1.0 Addition of GlobDB R226-based profiles. GTDB-based profiles are the same as in version 1.0.0 No new public metagenomes were analysed. version 1.0.0 Public metagenomes published before Feb 20, 2025 were analysed using SingleM pipe v0.18.3 (the default R220 metapackage), and then renewed using an R226 metapackage (S5.4.0.GTDB_r226.metapackage_20250331). version 0.3.0 Update profiles to use GTDB R220, generated using SingleM renew v0.17.0. version 0.2.0 Initial version. Created using a GTDB R214-based reference SingleM metapackage S3.2.1.GTDB_r214.metapackage_20231006 based on public datasets available Dec 15, 2021.